Programming Assignment 3 Due: April 22, Wednesday
Points: 30
Assignment on Hidden Markov Model, from Textbook's web page.
Groups:
Sally, Luis, Stephen
Greg, Richie, Ray
Griffin, Azhar, Vaibhav
Srividya, Nathan, Vikas
Go to the Textbook's page (from the class page) -> "Practical problems" -> Hidden Markov Model
http://bix.ucsd.edu/bioalgorithms/problems/06_asmt.htm
Work on the First problem therein:
Practical Problem Set #7: Hidden Markov Models
Replace the third bullet in the last paragraph (link at chr22_10k.fa is not working)
with an at aleast 5,000 bp long real genome (nucleotide sequence) of your choice from
the Swissprot database. Must mention the genome's ID.
As you write the answer (hardcopy), mention who (one or more persons) in the group worked
on that problem. Using the umdhmm package is ok.
THE ASSIGNMENT IS EASY BUT MAY NEED TIME TO SOLVE - DO NOT PROCASTRINATE!