Assignment/Project on Protein 3D Structure Alignment
============= Due March-April, 2010 (100 pts) ========

Ye et al. Paper presentation Schedule on 3/1 Monday:
(Each 20 min, 20 pts)
Mahmoud: 	Steps 1-2
Ron: 		Step 3
Tim:		Steps 4-5

C++ implementation of the algorithm:
(Each 20 min, 40 pts)
Mahmoud: 	Steps 1-2:	finish by & discuss/test/demo in class on 3/15/10
Ron: 		Step 3:	finish by & discuss/test/demo in class on 3/22/10
Tim:		Steps 4-5:	finish by & discuss/test/demo in class on 3/29/10

The assignment will continue with DALI, & LOCK search for the same proteins as 
in the paper.

============ Presentation Schedule ==============
3/17, Wednesday:	Ron:	Altschul et al's paper on BLAST
3/24, Wednesday:	Mahmoud:	TM Aligh paper by Zhang and Skolnick
3/31, Wednesday:	Tim:		LOCK paper by Singh and Brutlag

April 2010
...